abdomen abdomen abdominal fluid abdominal fluid acne acne activated sludge activated sludge adductor muscle adductor muscle agricultural soil agricultural soil air air amniotic fluid amniotic fluid Animal animal Animal-Cattle-Beef Cow animal-cattle-beef cow Animal-Cattle-Dairy Cow animal-cattle-dairy cow Animal-Cattle-Heifer animal-cattle-heifer Animal-Cattle-Steer animal-cattle-steer Animal-Chicken-Young Chicken animal-chicken-young chicken Animal-Swine-Market Swine animal-swine-market swine Animal-Swine-Sow animal-swine-sow antenna antenna aquaculture water aquaculture water aquifer sediment aquifer sediment aspirate aspirate Beef beef bile bile biofilm biofilm bitumen bitumen BLOOD blood blood cells blood cells blood sample blood sample Bodily fluid bodily fluid body fluid body fluid bone bone bone marrow bone marrow Bovine (feces) bovine feces bovine feces bovine feces bovine milk bovine milk Brain brain brain abscess brain abscess brain biopsy brain biopsy brain tissue brain tissue branch branch bronchial mucosa bronchial mucosa bronchoalveolar lavage bronchoalveolar lavage buccal epithelial cells buccal epithelial cells buccal mucosa buccal mucosa buccal swab buccal swab buffy coat buffy coat bursa bursa cabbage leaves cabbage leaves callus callus catfish catfish cave sediment cave sediment cave sediments cave sediments cerebellum cerebellum cerebrospinal fluid cerebrospinal fluid cervix cervix Channel catfish Channel catfish cheese cheese Chicken chicken Chicken Breast chicken breast Chicken Carcass chicken carcass Clinical clinical clinical isolate clinical isolate clinical isolates clinical isolates clinical sample clinical sample clinical samples clinical samples cloaca cloaca cloacal swab cloacal swab Comminuted Beef comminuted beef Comminuted Chicken comminuted chicken compost compost compost soil compost soil coral reef coral reef corn rhizosphere corn rhizosphere cornea cornea cotton rhizosphere cotton rhizosphere creek water creek water crown crown CSF CSF Cucumbers cucumbers culture culture curd sample curd sample dairy cow rumen dairy cow rumen dairy farm soil dairy farm soil distillery distillery drinking water drinking water ear ear egg egg embryogenic callus embryogenic callus Environmental environmental environmental sample environmental sample Environmental Swab environmental swab Environmental Swabs environmental swabs Environmental: non-food-contact surface environmental: non-food-contact surface epithelium epithelium esophageal mucosa esophageal mucosa estuarine water estuarine water estuarine waters estuarine waters Excreted bodily substance excreted bodily substance eye eye Faeces feces farm environment farm environment farm soil farm soil fecal feces fecal sample fecal sample fecal samples fecal samples Feces feces fermented food fermented food fermented soybeans fermented soybeans fetal brain fetal brain field soil field soil fin fin fin wound fin wound fish eggs fish eggs fish intestine fish intestine flooded rice soil flooded rice soil flower flower Food food food product food product food sample food sample food samples food samples forest forest forest soil forest soil freshwater freshwater freshwater stream freshwater stream fruit fruit fruit body fruit body fruitbody fruitbody fruiting body fruiting body gastric mucosa gastric mucosa gastrointestinal tract gastrointestinal tract genital cells genital cells genitals genitals gill gill gills gills goat milk goat milk Ground Chicken ground chicken Ground Turkey ground turkey groundwater groundwater head head head kidney head kidney heart heart heart blood heart blood hemocyte hemocyte hepatic bile duct hepatic bile duct hepatic biliary duct hepatic biliary duct hepatocyte hepatocyte hepatopancreas hepatopancreas horse horse Hospital hospital hot marine salterns hot marine salterns hot spring hot spring hot springs hot springs Human human human plasma human plasma human skin human skin infected leaf infected leaf inflorescence inflorescence intestinal mucosa intestinal mucosa intestine intestine intestines intestines kidney kidney kimchi kimchi lake lake lake isolate lake isolate lake mud lake mud lake sediment lake sediment lake soil lake soil lake water lake water leaf leaf leaves leaves lentil lentil liver liver liver abscess liver abscess lung lung lymph node lymph node lymphocyte lymphocyte maize maize mammary gland mammary gland mangrove sediment mangrove sediment mangrove sediments mangrove sediments mangrove soil mangrove soil manure manure marine environment marine environment marine sediment marine sediment marine sediments marine sediments marine water marine water mature leaf mature leaf meat meat midgut midgut Milk milk Missing missing mitral valve mitral valve mouth wound mouth wound mucosa mucosa mucus mucus muscle muscle muscle tissue muscle tissue mycelium mycelium Nares nares nasal nasal nasal mucosa nasal mucosa nasal sample nasal sample nasal samples nasal samples nasal swab nasal swab nasopharyngeal aspirate nasopharyngeal aspirate nasopharyngeal swab nasopharyngeal swab nasopharynx nasopharynx nest nest neuroblast neuroblast nodule nodule nodules nodules nose swab nose swab Not Applicable not applicable Not known not known olfactory mucosa olfactory mucosa oral fluid oral fluid oral lexion oral lexion oral mucosa oral mucosa Other other ovary ovary oviduct oviduct paddy soil paddy soil papaya papaya parietal cortex parietal cortex patient patient patient with urinary tract infection patient with urinary tract infection pericardial pericardial pharnyx pharnyx placenta placenta plasma plasma pleopod pleopod pleopods pleopods pleura pleura pod pod pond sediment pond sediment pond water pond water porcine Pleural Cavity porcine pleural cavity poultry farm soil poultry farm soil product-eggs-raw-whole product-eggs-raw-whole Product-Raw-Intact-Beef product-raw-intact-beef purulent fluid purulent fluid Raw Intact Chicken raw intact chicken Respiratory respiratory Respiratory system respiratory system respiratory tract respiratory tract Retail Deli retail deli Retail Meat retail meat rhizosphere rhizosphere rhizosphere soil rhizosphere soil rice rhizosphere rice rhizosphere rice soil rice soil river sand river sand river sediment river sediment river sediments river sediments river water river water root root root nodule root nodule root nodules root nodules root tip root tip root tips root tips roots roots rumen rumen saline lake saline lake saliva saliva salivary gland salivary gland saltern soil saltern soil seafood seafood seawater seawater sediment sediment sediments sediments seedling seedling seedling roots seedling roots sera sera serum serum sesame seeds sesame seeds sewage sludge sewage sludge shrimp pond shrimp pond skeletal muscle skeletal muscle skin skin skin lesion skin lesion sludge sludge soda lake soda lake Soil soil soil rhizosphere soil rhizosphere soil sample soil sample solar saltern solar saltern solar salterns solar salterns spindle leaf spindle leaf spleen spleen Sputum sputum stem stem stem base stem base stems stems stomach stomach Stool stool stool sample stool sample stool samples stool samples Stool/Fecal stool/fecal strawberry strawberry sulphur spring sulphur spring surface water surface water swab swab swamp soil swamp soil tail tail tannery waste tannery waste tannery waste effluent tannery waste effluent tentacle tentacle testes testes testis testis textile wastewater textile wastewater throat throat throat swab throat swab throat wash throat wash thymus thymus tissue biopsy tissue biopsy trachea trachea tracheal aspirate tracheal aspirate tracheal swab tracheal swab turfgrass turfgrass twig twig underground water underground water Unknown unknown urethra urethra Urine urine uterine mucosa uterine mucosa vegetable vegetable vegetables vegetables wastewater wastewater Water water white clover white clover whole blood whole blood whole cell/tissue lysate whole cell/tissue lysate WOUND wound yogurt yogurt