4 object names and lengths loaded from FASTA. 2:MICPUCscaffold_1 802 13515 2 N 12714 fragment yes NOTE: assuming AGP version 1.1 since linkage evidence (column 9) is empty 3:MICPUCscaffold_1 13516 33736 3 W ACCP01000002.1 1 20221 + ERROR: final object_end (column 3) not equal to object length in FASTA file(s): 33736 != 70 6:MICPUCscaffold_20 6532 8981 3 W ACCP01000496.1 1 2450 + ERROR: final object_end (column 3) not equal to object length in FASTA file(s): 8981 != 630 7:>MICPUCscaffold_21 1 5431 1 W ACCP01000497.1 1 5431 + ERROR: object >MICPUCscaffold_21 not found in FASTA file(s) 3 errors, 1 warning, 1 note. Count Code Description 1 w58 assuming AGP version X 1 g77 object X not found in FASTA file(s) 2 g78 final object_end (column 3) not equal to object length in FASTA file(s) - - object name(s) in FASTA not found in AGP Objects : 3 - with single component: 1 Scaffolds : 3 - with single component: 1 Components : 5 (W) orientation + : 5 orientation - : 0 orientation ? (formerly 0) : 0 orientation na : 0 Gaps : 2 (N) - do not break scaffold: 2 fragment, linkage yes: 2 - break it, linkage no : 0 Object names : 3 != 4 in the FASTA MICPUCscaffold_[1,20]: 2 >MICPUCscaffold_21 : 1 Component names : 5 ACCP[01000001..01000497].1: 5 WARNING -- 2 object names in FASTA not found in AGP: MICPUCscaffold_2 MICPUCscaffold_21