===== Reading Chromosome from scaffold AGP =====

10:chrY	3044	53043	2	N	50000	contig	no	
	NOTE: assuming AGP version 1.1 since linkage evidence (column 9) is empty

No errors, no warnings, 1 note.
  Count Code  Description
      1  w58  assuming AGP version X


Objects                :  1
- with single component:  0

Scaffolds              : 23
- with single component: 23

Components                   : 23 (W)
  orientation +              : 20
  orientation -              :  0
  orientation ? (formerly 0) :  3
  orientation na             :  0

Gaps                   : 22 (N)
- do not break scaffold:  0
- break it, linkage no : 22
	contig         : 22 (100% of N gaps have length=50000)

Most frequent N gap_length (100% or 22 lines): 50000

Object names:  1
  chrY      :  1

Component names      :  23
  EG1_scaffold[1..23]:  23

#Comment line count    : 8
===== Reading Scaffold from component AGP =====

9:EG1_scaffold2	40449	40548	2	N	100	fragment	yes	
	NOTE: assuming AGP version 1.1 since linkage evidence (column 9) is empty

No errors, no warnings, 1 note.
  Count Code  Description
      1  w58  assuming AGP version X


Objects                : 23
- with single component: 13

Scaffolds              : 23
- with single component: 13

Components                   : 95 (W)
  orientation +              : 81
  orientation -              : 14
  orientation ? (formerly 0) :  0
  orientation na             :  0

Gaps                   : 72 (N)
- do not break scaffold: 72
  fragment, linkage yes: 72 (20 or 27.8% of N gaps have length=100)
- break it, linkage no :  0

Most frequent N gap_length (27.8% or 20 lines): 100

Object names         :  23
  EG1_scaffold[1..23]:  23

Component names             :  95
  AADB[02037551..02037645].1:  95

#Comment line count    : 6