5:chr1 2521256 2521355 2 U 100 scaffold yes map NOTE: assuming AGP version 2 since linkage evidence (column 9) is NOT empty 10:chr1 4294967300 4294967306 7 W PGSH01018958.1 1 6 + ERROR, line skipped: object_beg (column 2) must not exceed 4294967294 ERROR, line skipped: object_end (column 3) must not exceed 4294967294 11:chr1 2147385906 -2146453863 4221 W PGSH01000058.1 1 1127528 + ERROR, line skipped: object_end (column 3) must be a positive integer 12:chr1 -2146453862 -2146453763 4222 U 100 scaffold yes map ERROR, line skipped: object_beg (column 2) must be a positive integer ERROR, line skipped: object_end (column 3) must be a positive integer 5 errors, no warnings, 1 note. Count Code Description 3 e06 X must be a positive integer 2 e07 X must not exceed 4294967294 1 w58 assuming AGP version X NOTE: 3 invalid lines were skipped (not subjected to all the checks, not included in most of the counts below). Objects : 1 - with single component: 0 Scaffolds : 1 - with single component: 0 Components : 4 (W) orientation + : 4 orientation - : 0 orientation ? (formerly 0) : 0 orientation na : 0 Gaps : 3 (U) - do not break scaffold: 3 scaffold, linkage yes: 3 - break it, linkage no : 0 Linkage evidence: map: 3 Object names: 1 chr1 : 1 Component names : 4 PGSH[01018960..01099427].1: 4 #Comment line count : 3