# COMMENT: Generated by ALLMAPS v0.5.3 (2018-06-08) # COMMAND: python -m jcvi.assembly.allmaps path --cpus 48 Genotypes_Allnewsplit_Xw3_RF_WGw2_AGOUTI_FULLw2_RF_genemodw1.tabs.bed /box85T/SALAMANDER/Assemblies/Clean_fasta_assemblies/WG/Tamapka2018/AmexG_v3.0.0.NEW.SOFTMASKED.fa -w weights.txt --ngen 0 --npop 1 # FIELDS: object, object_beg, object_end, part_number, component_type, component_id/gap_length, component_beg/gap_type, component_end/linkage, orientation/linkage_evidence chr1 1 2521255 1 W PGSH01056636.1 1 2521255 + chr1 2521256 2521355 2 U 100 scaffold yes map chr1 2521356 3938757 3 W PGSH01025211.1 1 1417402 + chr1 3938758 3938857 4 U 100 scaffold yes map chr1 3938858 5455182 5 W PGSH01099427.1 1 1516325 + chr1 5455183 5455282 6 U 100 scaffold yes map chr1 4294967300 4294967306 7 W PGSH01018958.1 1 6 + chr1 2147385906 -2146453863 4221 W PGSH01000058.1 1 1127528 + chr1 -2146453862 -2146453763 4222 U 100 scaffold yes map chr1 4294967290 4294967294 7 W PGSH01018960.1 1 5 +