# ORGANISM: Homo sapiens # TAX_ID: 9606 # ASSEMBLY NAME: EGgood # ASSEMBLY DATE: 21-October-2006 # GENOME CENTER: NCBI # DESCRIPTION: Example AGP to test that no allowed values are flagged as errors chrY 1 50000 1 N 50000 short_arm yes # comment chrY 50001 53043 2 B AADB02037551.1 1 3043 + chrY 53044 93491 3 w AADB02037552.1 1 40448 + chrY 93492 93591 4 N 100 fragment yes # another comment chrY 93592 170572 5 9 AADB02037553.1 1 76981 + chrY 170573 170672 6 n 100 fragment no chrY 170673 198341 7 - AADB02037554.1 1 27669 + chrY 198342 198441 8 N 100 fragment yes chrY 198442 201393 9 O AADB02037555.1 1 2952 + chrY 201394 201493 10 N 100 fragment yes chrY 201494 205642 11 P AADB02037556.1 1 4149 - chrY 205643 205742 12 u 100 fragment yes chrY 205743 211650 13 W AADB02037557.1 1 5908 ? chrY 211651 216001 14 N 4351 fragment yes chrY 216002 225519 15 W AADB02037558.1 1 9518 + chrY 225520 225619 16 N 100 fragment yes chrY 225620 266272 17 W AADB02037559.1 1 40653 + chrY 266273 266372 18 N 100 fragment yes chrY 266373 279509 19 W AADB02037560.1 1 13137 + chrY 279510 279908 20 N 399 fragment yes chrY 279909 282910 21 W AAAA01999999.1 1 3002 + chrY 282911 283615 22 N 705 fragment yes chrY 283616 284791 23 W AADB02037562.1 1 1176 - chrY 284792 285516 24 N 725 fragment yes chrY 285517 286718 25 W AADB02037563.1 1 1202 + chrY 286719 286757 26 N 39 fragment yes chrY 286758 287968 27 W AADB02037564.1 1 1211 + chrY 287969 301116 28 N 13148 fragment yes chrY 301117 1712590 29 W AADB02037565.1 1 1411474 + chrY 1712591 1732109 30 N 19519 fragment yes chrY 1732110 1736209 31 W AADB02037566.1 1 4100 + chrY 1736210 1736309 32 N 100 fragment yes chrY 1736310 1741393 33 W AADB02037567.1 1 5084 + chrY 1741394 1743966 34 N 2573 fragment yes chrY 1743967 1763616 35 W AADB02037568.1 1 19650 + chrY 1763617 1772611 36 N 8995 fragment yes chrY 1772612 1852122 37 W AADB02037569.1 1 79511 + chrY 1852123 1852421 38 N 299 fragment yes chrY 1852422 2386127 39 W AADB02037570.1 1 533706 + chrY 2386128 2386281 40 N 154 fragment yes chrY 2386282 2590020 41 W AADB02037571.1 1 203739 + chrY 2590021 2614058 42 N 24038 fragment yes chrY 2614059 2793942 43 W AADB02037572.1 1 179884 + chrY 2793943 2794042 44 N 100 fragment yes chrY 2794043 2797034 45 W AADB02037573.1 1 2992 + chrY 2797035 2797354 46 N 320 fragment yes chrY 2797355 2816908 47 W AADB02037574.1 1 19554 + chrY 2816909 2817008 48 N 100 fragment yes chrY 2817009 2823926 49 W AADB02037575.1 1 6918 + chrY 2823927 2826770 50 N 2844 fragment yes chrY 2826771 2973279 51 W AADB02037576.1 1 146509 + chrY 2973280 2973379 52 N 100 fragment yes chrY 2973380 3302641 53 W AADB02037577.1 1 329262 + chrY 3302642 3302894 54 N 253 fragment yes chrY 3302895 3345191 55 W AADB02037578.1 1 42297 + chrY 3345192 3345359 56 N 168 fragment yes chrY 3345360 3351684 57 W AADB02037579.1 1 6325 + chrY 3351685 3352953 58 N 1269 fragment yes chrY 3352954 3423627 59 W AADB02037580.1 1 70674 + chrY 3423628 3473627 60 N 50000 contig yes chrY 3473628 3565954 61 W AADB02037581.1 1 92327 0 chrY 3565955 3615954 62 N 50000 clone no chrY 3615955 3623104 63 W AADB02037582.1 1 7150 na chrY 3623105 3673104 64 N 50000 centromere yes chrY 3673105 3678682 65 W AADB02037583.1 1 5578 ? chrY 3678683 3728682 66 N 50000 heterochromatin yes chrY 3728683 3733272 67 W AADB02037584.1 1 4590 + chrY 3733273 3733463 68 N 191 fragment yes chrY 3733464 3806628 69 W AADB02037585.1 1 73165 + chrY 3806629 3856628 70 N 50000 repeat no chrY 3856629 4878165 71 W AADB02037586.1 1 1021537 + chrY 4878166 4884628 72 N 6463 fragment yes chrY 4884629 5284355 73 W AADB02037587.1 1 399727 + chrY 5284356 5284455 74 N 100 fragment yes chrY 5284456 5300534 75 W AADB02037588.1 1 16079 + chrY 5300535 5330109 76 N 29575 fragment yes chrY 5330110 5335416 77 W AADB02037589.1 1 5307 + chrY 5335417 5342520 78 N 7104 fragment yes chrY 5342521 5346939 79 W AADB02037590.1 1 4419 + chrY 5346940 5375839 80 N 28900 fragment yes chrY 5375840 5379689 81 W AADB02037591.1 1 3850 - chrY 5379690 5379789 82 N 100 fragment yes chrY 5379790 5398723 83 W AADB02037592.1 1 18934 + chrY 5398724 5399398 84 N 675 fragment yes chrY 5399399 5405246 85 W AADB02037593.1 1 5848 + chrY 5405247 5431630 86 N 26384 fragment yes chrY 5431631 5453003 87 W AADB02037594.1 1 21373 + chrY 5453004 5453312 88 N 309 fragment yes chrY 5453313 5456404 89 W AADB02037595.1 1 3092 + chrY 5456405 5506404 90 N 50000 contig no chrY 5506405 5508329 91 W AADB02037596.1 1 1925 - chrY 5508330 5515916 92 N 7587 fragment yes chrY 5515917 5791801 93 W AADB02037597.1 1 275885 + chrY 5791802 5791967 94 N 166 fragment yes chrY 5791968 6579354 95 W AADB02037598.1 1 787387 + chrY 6579355 6579454 96 N 100 fragment yes chrY 6579455 6934572 97 W AADB02037599.1 1 355118 + chrY 6934573 6984572 98 N 50000 clone yes chrY 6984573 6989697 99 W AADB02037600.1 1 5125 + chrY 6989698 6997597 100 N 7900 repeat yes chrY 6997598 7000631 101 W AADB02037601.1 0 3034 + chrY 7000632 7050631 102 N 0 contig no chrY 7050632 7053381 103 W AADB02037602.1 1 0 + chrY 7053382 7103381 0 N 50000 contig no chrY 0 7107650 105 W AADB02037603.1 1 4269 + chrY 7107651 0 106 N 50000 contig no chrY 7157651 7281420 107 W AADB02037604.1 1 123770 + chrY 7281421 7283563 108 N 2143 fragment yes chrY 7283564 7831615 109 W AADB02037605.1 1 548052 + chrY 7831616 7831715 110 N 100 fragment yes chrY 7831716 7862605 111 W AADB02037606.1 1 30890 - chrY 7862606 7862705 112 N 100 fragment yes chrY 7862706 8286153 113 W AADB02037607.1 1 423448 - chrY 8286154 8336153 114 N 50000 contig no chrY 18336154 8409082 115 W AADB02037608.1 1 72929 + chrY 8409083 8451472 116 N 42390 fragment yes chrY 8451473 8469374 117 W AADB02037609.1 17902 1 + chrY 8469375 8519374 118 N 50000 contig no chrY 8519375 8520890 119 W AADB02037610.1 1 1516 + chrY 8520891 8520990 120 N 100 fragment yes chrY 8520991 8527212 121 W AADB02037611.1 1 6222 - chrY 8527213 8529765 122 N 2553 fragment yes chrY 8529766 8532293 123 W AADB02037612.1 1 2528 - chrY 8532294 8532429 124 N 136 fragment yes chrY 8532430 8534242 125 W AADB02037613.1 1 1813 + chrY 8534243 8534387 126 N 145 fragment yes chrY 8534388 8535698 127 N 1311 fragment yes chrY 8535699 8535938 128 N 240 fragment yes chrY 8535939 8537258 129 W AADB02037615.1 1 1320 - chrY 8537259 8537565 130 N 307 fragment yes chrY 8537566 8541320 131 W AADB02037616.1 1 3755 - chrY 8541321 8551789 132 N 10469 fragment yes chrY 8551790 8608339 133 W AADB02037617.1 1 56550 - chrY 8608340 8614679 134 N 6340 fragment yes chrY 8614680 8619859 135 W AADB02037618.1 1 5180 + chrY 8619860 8669859 136 N 50000 contig no chrY 8669860 9049334 137 W AADB02037619.1 1 379475 + chrY 9049335 9099334 138 N 50000 contig no chrY 9099335 9302372 139 W AADB02037620.1 1 203038 + chrY 9302373 9307070 140 N 4698 fragment yes chrY 9307071 9315045 141 W AADB02037621.1 1 7975 - chrY 9315045 9322053 142 N 7009 fragment yes chrY 9322054 9325079 143 W AADB02037622.1 1 3026 + chrY 9325079 9325178 144 N 100 fragment yes chrY 9325179 9328203 145 W AADB02037623.1 1 3025 + chrY 9328204 9332432 146 N 4229 fragment yes chrY 9332433 9358223 147 W AADB02037624.1 1 25791 + chrY 9358124 9358223 148 N 100 fragment yes chrY 9358324 9364423 149 W AADB02037625.1 1 6100 + chrY 9364424 9364586 150 N 163 fragment yes chrY 9364587 9383558 151 W AADB02037626.1 1 18972 + chrY 9383559 9385297 152 N 1739 fragment yes chrY 9385298 9389147 153 W AADB02037627.1 1 3850 + chrY 9389148 9389888 154 N 741 fragment yes chrY 9389889 9422613 155 W AADB02037628.1 1 32725 + chrY 9422614 9424834 156 N 2221 fragment yes chrY 9424835 9431855 157 W AADB02037629.1 1 7021 + chrY 9431856 9434769 158 N 2914 fragment yes chrY 9434770 9442744 159 W AADB02037630.1 1 7975 + chrY 9442745 9466902 160 N 24158 fragment yes chrY 9466903 9528370 161 W AADB02037631.1 1 61468 + chrY 9528371 9528723 162 N 353 fragment yes chrY 9528724 9636535 163 W AADB02037632.1 1 107812 + chrY 9636536 9686535 164 N 50000 contig no chrY 9686536 9716128 165 W AADB02037633.1 1 29593 + chrY 9716129 9766128 166 N 50000 contig no chrY 9766129 9771185 167 W AADB02037634.1 1 5057 + chrY 9771186 9821185 168 N 50000 contig no chrY 9821186 10128960 169 W AADB02037635.1 1 307775 + chrY 10128961 10178960 170 N 50000 scaffold no chrY 10178961 10194983 171 W AADB02037636.1 1 16023 + chrY 10194984 10244983 172 N 50000 contig ? chrY 10244984 10339653 173 W AADB02037637.1 1 94670 + chrY 10339654 10350772 174 N 11119 fragment yes chrY 10350773 10384884 175 W AADB02037638.1 1 34112 + chrY 10384885 10386243 176 N 1359 fragment yes chrY 10386244 10487040 177 W AADB02037639.1 1 100797 + chrY 10487041 10503427 178 N 16387 fragment yes chrY 10503428 10507046 179 W AADB02037640.1 1 3619 - chrY 10507047 10507146 180 N 100 fragment yes chrY 10507147 10509939 180 W AADB02037641.1 1 2793 -# modified chrY 10509940 10517020 182 N 100 fragment yes # modified chrY 10517021 10587381 183 W AADB02037642.1 1 70361 + chrY 10587382 10588677 184 N 1296 fragment yes chrY 10588678 10901300 185 W AADB02037643.1 1 312623 + chrY 10901301 10951300 186 N 50000 telomere yes chrY 10951301 10955351 187 W AADB02037644.1 1 4051 + chrY 10955352 11009781 188 N 54430 telomere no chrX 1001 2000 1 W AADB02037645.1 1 1000 + chrX 2002 3001 2 W AADB02037646.1 1 1000 + chrZ 1 1000 3 W AADB02037647.1 1 1000 + chrX 1 100 1 W AADB02037645.1 1 1000 + chrX 2002 3001 2 W AADB02037646.1 1 1000 + 1 1000 1 W AADB02037648.1 1 1000 + chrA 2000 2 W AADB02037649.1 1 1000 + chrA 2001 3 W AADB02037650.1 1 1000 + chrA 3001 4000 W AADB02037651.1 1 1000 + chrA 4001 5000 5 AADB02037652.1 1 1000 + chrA 5001 6000 6 W 1 1000 + chrA 6001 7000 7 W AADB02037654.1 1000 + chrA 7001 8000 8 W AADB02037655.1 1 + chrA 8001 9000 9 W AADB02037656.1 1 1000 chrA 9001 10000 10 W AADB02037657.1 1 1000 + # tab-comment chrA 10001 11000 11 W AADB02037658.1 1 1000 chrA 11001 12000 12 W AADB02037659.1 1 1000 + chrA 12001 13000 13 W AADB02037660.1 1 1000 + chrB 1 100 1 N 100 fragment yes chrY 1 177051 1 D AC163727.2 1 177051 + chrY 177052 177151 2 N 100 fragment yes chrY 177152 195000 3 D AC163727.2 177152 195000 + chrY 195001 218557 4 F AC163728.2 9173 32729 - chrY 218558 218657 5 N 100 fragment yes chrY 218658 223697 6 F AC163728.2 4033 9072 - chrY 223698 223797 7 N 100 fragment yes chrY 223798 277847 8 F AC163728.2 65081 119130 - chrY 277848 443135 9 F AC16371.2 1 165288 + chrY 443136 452790 10 F AC158542.1 1549 11203 + chrY 452791 452890 11 N 100 fragment yes chrY 452891 462370 12 F AC158542.1 11304 20783 + chrY 462371 462470 13 N 100 fragment yes chrY 462471 471917 14 F AC158542.1 20884 30330 + chrY 471918 472017 15 N 100 fragment yes chrY 472018 564686 16 F AC158542.1 85272 177940 + chrY 564687 564786 17 N 100 fragment yes chrY 564787 567081 18 F AC158542.1 38856 41150 + chrY 567082 774464 19 F AC163726 1 207383 + chrC 1 100 1 W AADB02037644.1 4051 4150 + chrC 101 200 2 W AADB02037645.1 1000 1099 - chrC 201 300 3 W AADB02037646.1 1 100 -