2:scaffold_0 2107 4201 2 N 2095 fragment yes NOTE: assuming AGP version 1.1 since linkage evidence (column 9) is empty Note: temporary Entrez2 problems; falling back to Object Manager for this batch: AAAGU02000003 AAGU02000001.15 AAGU02000002 ... AAGU02222225 AAGU02990008 ABRQ01000007 NT_165199 (total 10) PLEASE IGNORE any (Timeout) warnings above! 1:scaffold_0 1 2106 1 W AAGU02000001.15 1 2106 +#bad version ERROR: component_id not in GenBank: AAGU02000001.15 5:scaffold_0 6958 9528 5 W AAAGU02000003 1 2571 +#invalid accession format ERROR: invalid component_id: AAAGU02000003 9:scaffold_0 16359 18971 9 W AAGU02222225 1 2613 +#component_end greater than sequence length ERROR: component_end greater than sequence length: 2613 > AAGU02222225 length = 2083 bp 15:scaffold_0 41674 42468 15 W AAGU02990008 1 795 +#does not exist ERROR: component_id not in GenBank: AAGU02990008 19:scaffold_0 51260 62231 19 W NT_165199 1 10972 +#ambiguous without version ERROR: component_id NT_165199 (current version 3) is ambiguous without an explicit version The AGP taxid is: 9785 Components with incorrect taxids: 13: ABRQ01000007 - Taxid 9813 7 lines with valid component accessions. 5 errors: Count Code Description 1 w58 assuming AGP version X 1 g71 invalid component_id 2 g72 component_id not in GenBank 1 g73 component_id X is ambiguous without an explicit version 1 g74 component_end greater than sequence length