v1 - Revision 103783: /trunk/c++/src/algo/blast/api

• ..
• CMakeLists.txt
• CMakeLists.xblast.lib.txt
• Makefile.in
• Makefile.xblast.lib
• Makefile.xblast.lib.msvc
• Makefile.xblast.lib.unix
• bioseq_extract_data_priv.cpp
• bioseq_extract_data_priv.hpp
• bl2seq.cpp
• blast_advprot_options.cpp
• blast_aux.cpp
• blast_aux_priv.cpp
• blast_aux_priv.hpp
• blast_dbindex.cpp
• blast_memento_priv.hpp
• blast_mtlock.cpp
• blast_node.cpp
• blast_nucl_options.cpp
• blast_objmgr_priv.hpp
• blast_objmgr_tools.cpp
• blast_options_builder.cpp
• blast_options_cxx.cpp
• blast_options_handle.cpp
• blast_options_local_priv.cpp
• blast_options_local_priv.hpp
• blast_prot_options.cpp
• blast_results.cpp
• blast_rps_options.cpp
• blast_seqalign.cpp
• blast_seqalign.hpp
• blast_seqinfosrc_aux.cpp
• blast_setup.hpp
• blast_setup_cxx.cpp
• blast_usage_report.cpp
• blastp_kmer_options.cpp
• blastx_options.cpp
• cdd_pssm_input.cpp
• deltablast.cpp
• deltablast_options.cpp
• disc_nucl_options.cpp
• dust_filter.cpp
• dust_filter.hpp
• effsearchspace_calc.cpp
• local_blast.cpp
• local_db_adapter.cpp
• local_search.cpp
• magicblast.cpp
• magicblast_options.cpp
• msa_pssm_input.cpp
• objmgr_query_data.cpp
• objmgrfree_query_data.cpp
• phiblast_nucl_options.cpp
• phiblast_prot_options.cpp
• prelim_search_runner.hpp
• prelim_stage.cpp
• psi_pssm_input.cpp
• psibl2seq.cpp
• psiblast.cpp
• psiblast_aux_priv.cpp
• psiblast_aux_priv.hpp
• psiblast_impl.cpp
• psiblast_impl.hpp
• psiblast_iteration.cpp
• psiblast_options.cpp
• pssm_engine.cpp
• query_data.cpp
• remote_blast.cpp
• remote_search.cpp
• repeats_filter_cxx.cpp
• rps_aux.cpp
• rpsblast_local.cpp
• rpstblastn_options.cpp
• search_strategy.cpp
• seedtop.cpp
• seqinfosrc_bioseq.cpp
• seqinfosrc_bioseq.hpp
• seqinfosrc_seqdb.cpp
• seqinfosrc_seqvec.cpp
• seqsrc_multiseq.cpp
• seqsrc_query_factory.cpp
• seqsrc_query_factory.hpp
• seqsrc_seqdb.cpp
• setup_factory.cpp
• split_query.hpp
• split_query_aux_priv.cpp
• split_query_aux_priv.hpp
• split_query_blk.cpp
• split_query_blk.hpp
• split_query_cxx.cpp
• subj_ranges_set.cpp
• tblastn_options.cpp
• tblastx_options.cpp
• traceback_stage.cpp
• uniform_search.cpp
• version.cpp
• winmask_filter.cpp
• winmask_filter.hpp