################################# # $Id$ # This file contains macro definitions for using libraries maintained by the # BLAST TEAM # Author: Christiam Camacho (camacho@ncbi.nlm.nih.gov) ################################# BLAST_FORMATTER_MINIMAL_LIBS = xblastformat align_format taxon1 blastdb_format \ $(XFORMAT_LIBS) xalnmgr blastxml blastxml2 xcgi xhtml # BLAST_FORMATTER_LIBS = $(BLAST_FORMATTER_MINIMAL_LIBS) BLAST_FORMATTER_LIBS = $(BLAST_INPUT_LIBS) BLAST_DB_DATA_LOADER_LIBS = ncbi_xloader_blastdb_rmt ncbi_xloader_blastdb BLAST_INPUT_LIBS = blastinput \ $(BLAST_DB_DATA_LOADER_LIBS) $(BLAST_FORMATTER_MINIMAL_LIBS) # Libraries required to link against the internal BLAST SRA library BLAST_SRA_LIBS=blast_sra $(SRAXF_LIBS) vxf $(SRA_LIBS) # BLAST_FORMATTER_LIBS and BLAST_INPUT_LIBS need $BLAST_LIBS BLAST_LDEP = utrtprof xalgoblastdbindex composition_adjustment \ xalgodustmask xalgowinmask seqmasks_io seqdb blast_services xalnmgr \ xobjutil $(OBJREAD_LIBS) xnetblastcli xnetblast blastdb \ sqlitewrapp scoremat tables $(LMDB_LIB) BLAST_LIBS = proteinkmer xblast $(BLAST_LDEP) # BLAST additionally needs xconnect $(SOBJMGR_LIBS) or $(OBJMGR_LIBS) BLAST_THIRD_PARTY_INCLUDE = $(LMDB_INCLUDE) $(SQLITE3_INCLUDE) BLAST_THIRD_PARTY_LIBS = $(SQLITE3_LIBS) $(LMDB_LIBS) BLAST_THIRD_PARTY_STATIC_LIBS = $(SQLITE3_STATIC_LIBS) $(LMDB_STATIC_LIBS)